SRST2 - Short Read Sequence Typing for Bacterial Pathogens
This program is designed to take Illumina sequence data, a MLST database and/or a database
of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of
STs and/or reference genes.
Story behind the paper: blog posts from the Holt lab and BioMed Central
Dependencies (latest release SRST2 v0.1.8 - March 15, 2016):